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Accurate observational estimation of the ocean surface heat, momentum, and freshwater fluxes is crucial for studies of the global climate system. Estimating surface flux using satellite remote sensing techniques is one possible answer to this challenge. In this paper, we introduce J-OFURO3, a third-generation data set developed by the Japanese Ocean Flux Data Sets with Use of Remote-Sensing Observations (J-OFURO) research project, which represents a significant improvement from older data sets as the result of research and development conducted from several perspectives. J-OFURO3 offers data sets for surface heat, momentum, freshwater fluxes, and related parameters over the global oceans (except regions of sea ice) from 1988 to 2013. The surface flux data, based on a 0.25A degrees grid system, have a higher spatial resolution and are more accurate than the previous efforts. This has been achieved through the adopting of the state-of-the-art algorithms that estimate the near-surface air specific humidity and the improvement of techniques using observations from multi-satellite sensors. Comparisons with in situ observations using a systematic system developed along with the J-OFURO3 data set confirmed these improvements in accuracy, as did comparisons with other data sets. J-OFURO3 data are of good quality, facilitating a clearer understanding of more fine-scale ocean-atmosphere features (such as ocean fronts, mesoscale eddies, and geographic features) and their effects on surface fluxes. The information contained in this long-term (26 year) data set is demonstrably beneficial to understanding climate change and its relationship to oceans and the atmosphere.