CCPortal
DOI10.1111/ddi.12868
Effects of simulated observation errors on the performance of species distribution models
Fernandes, Rui F.1; Scherrer, Daniel1; Guisan, Antoine1,2
发表日期2019
ISSN1366-9516
EISSN1472-4642
卷号25期号:3页码:400-413
英文摘要

Aim Species distribution information is essential under increasing global changes, and models can be used to acquire such information but they can be affected by different errors/bias. Here, we evaluated the degree to which errors in species data (false presences-absences) affect model predictions and how this is reflected in commonly used evaluation metrics. Location Western Swiss Alps. Methods Using 100 virtual species and different sampling methods, we created observation datasets of different sizes (100-400-1,600) and added increasing levels of errors (creating false positives or negatives; from 0% to 50%). These degraded datasets were used to fit models using generalized linear model, random forest and boosted regression trees. Model fit (ability to reproduce calibration data) and predictive success (ability to predict the true distribution) were measured on probabilistic/binary outcomes using Kappa, TSS, MaxKappa, MaxTSS and Somers'D (rescaled AUC). Results The interpretation of models' performance depended on the data and metrics used to evaluate them, with conclusions differing whether model fit, or predictive success were measured. Added errors reduced model performance, with effects expectedly decreasing as sample size increased. Model performance was more affected by false positives than by false negatives. Models with different techniques were differently affected by errors: models with high fit presenting lower predictive success (RFs), and vice versa (GLMs). High evaluation metrics could still be obtained with 30% error added, indicating that some metrics (Somers'D) might not be sensitive enough to detect data degradation. Main conclusions Our findings highlight the need to reconsider the interpretation scale of some commonly used evaluation metrics: Kappa seems more realistic than Somers'D/AUC or TSS. High fits were obtained with high levels of error added, showing that RF overfits the data. When collecting occurrence databases, it is advisory to reduce the rate of false positives (or increase sample sizes) rather than false negatives.


WOS研究方向Biodiversity & Conservation ; Environmental Sciences & Ecology
来源期刊DIVERSITY AND DISTRIBUTIONS
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/94073
作者单位1.Univ Lausanne, Dept Ecol & Evolut, Lausanne, Switzerland;
2.Univ Lausanne, Inst Earth Surface Dynam, Geopolis, Lausanne, Switzerland
推荐引用方式
GB/T 7714
Fernandes, Rui F.,Scherrer, Daniel,Guisan, Antoine. Effects of simulated observation errors on the performance of species distribution models[J],2019,25(3):400-413.
APA Fernandes, Rui F.,Scherrer, Daniel,&Guisan, Antoine.(2019).Effects of simulated observation errors on the performance of species distribution models.DIVERSITY AND DISTRIBUTIONS,25(3),400-413.
MLA Fernandes, Rui F.,et al."Effects of simulated observation errors on the performance of species distribution models".DIVERSITY AND DISTRIBUTIONS 25.3(2019):400-413.
条目包含的文件
条目无相关文件。
个性服务
推荐该条目
保存到收藏夹
导出为Endnote文件
谷歌学术
谷歌学术中相似的文章
[Fernandes, Rui F.]的文章
[Scherrer, Daniel]的文章
[Guisan, Antoine]的文章
百度学术
百度学术中相似的文章
[Fernandes, Rui F.]的文章
[Scherrer, Daniel]的文章
[Guisan, Antoine]的文章
必应学术
必应学术中相似的文章
[Fernandes, Rui F.]的文章
[Scherrer, Daniel]的文章
[Guisan, Antoine]的文章
相关权益政策
暂无数据
收藏/分享

除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。