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DOI10.1038/s41437-018-0123-9
Approximate Bayesian computation analysis of EST-associated microsatellites indicates that the broadleaved evergreen tree Castanopsis sieboldii survived the Last Glacial Maximum in multiple refugia in Japan
Aoki, K.1; Tamaki, I2; Nakao, K.3; Ueno, S.4; Kamijo, T.5; Setoguchi, H.6; Murakami, N.7; Kato, M.6; Tsumura, Y.4,5
发表日期2019
ISSN0018-067X
EISSN1365-2540
卷号122期号:3页码:326-340
英文摘要

Climatic changes have played major roles in plants' evolutionary history. Glacial oscillations have been particularly important, but some of their effects on plants' populations are poorly understood, including the numbers and locations of refugia in Asian warm temperate zones. In the present study, we investigated the demographic history of the broadleaved evergreen tree species Castanopsis sieboldii (Fagaceae) during the last glacial period in Japan. We used approximate Bayesian computation (ABC) for model comparison and parameter estimation for the demographic modeling using 27 EST-associated microsatellites. We also performed the species distribution modeling (SDM). The results strongly support a demographic scenario that the Ryukyu Islands and the western parts in the main islands (Kyushu and western Shikoku) were derived from separate refugia and the eastern parts in the main islands and the Japan Sea groups were diverged from the western parts prior to the coldest stage of the Last Glacial Maximum (LGM). Our data indicate that multiple refugia survived at least one in the Ryukyu Islands, and the other three regions of the western and eastern parts and around the Japan Sea of the main islands of Japan during the LGM. The SDM analysis also suggests the potential habitats under LGM climate conditions were mainly located along the Pacific Ocean side of the coastal region. Our ABC-based study helps efforts resolve the demographic history of a dominant species in warm temperate broadleaved forests during and after the last glacial period, which provides a basic model for future phylogeographical studies using this approach.


WOS研究方向Environmental Sciences & Ecology ; Evolutionary Biology ; Genetics & Heredity
来源期刊HEREDITY
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/94017
作者单位1.Osaka Univ, United Grad Sch Child Dev, Suita, Osaka 5650871, Japan;
2.Gifu Acad Forest Sci & Culture, Gifu 5013714, Japan;
3.Forest Res & Management Org, Forestry & Forest Prod Res Inst, Kansai Res Ctr, Kyoto 6120855, Japan;
4.Forest Res & Management Org, Dept Forest Mol Genet & Biotechnol, Forestry & Forest Prod Res Inst, Tsukuba, Ibaraki 3058687, Japan;
5.Univ Tsukuba, Fac Life & Environm Sci, Tsukuba, Ibaraki 3058572, Japan;
6.Kyoto Univ, Grad Sch Human & Environm Studies, Kyoto 6068501, Japan;
7.Tokyo Metropolitan Univ, Makino Herbarium, Hachioji, Tokyo 1920397, Japan
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Aoki, K.,Tamaki, I,Nakao, K.,et al. Approximate Bayesian computation analysis of EST-associated microsatellites indicates that the broadleaved evergreen tree Castanopsis sieboldii survived the Last Glacial Maximum in multiple refugia in Japan[J],2019,122(3):326-340.
APA Aoki, K..,Tamaki, I.,Nakao, K..,Ueno, S..,Kamijo, T..,...&Tsumura, Y..(2019).Approximate Bayesian computation analysis of EST-associated microsatellites indicates that the broadleaved evergreen tree Castanopsis sieboldii survived the Last Glacial Maximum in multiple refugia in Japan.HEREDITY,122(3),326-340.
MLA Aoki, K.,et al."Approximate Bayesian computation analysis of EST-associated microsatellites indicates that the broadleaved evergreen tree Castanopsis sieboldii survived the Last Glacial Maximum in multiple refugia in Japan".HEREDITY 122.3(2019):326-340.
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