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Soil organic matter (SOM) plays an important role in environmental sustainability, since it is involved in carbon and nutrient cycling. Consequently, it is a key factor to consider in studies concerning global climate change and agronomy. Among the main components of SOM are humic substances (HS), which are divided, according to their solubility, into humic acid (HA), fulvic acid (FA), and humin (HU) fractions. Study of the chemical properties of this organic matter is important for understanding the biogeochemical processes occurring in the soil. The aim of this work was to determine the metals iron (Fe) and aluminum (Al), using flame atomic absorption spectrometry (FAAS) and laser-induced breakdown spectroscopy (LIBS), in order to elucidate the role of organic matter in the transport of these metals in Amazonian soils. The results showed that FA was important for Al, while the HA fraction was more selective towards Fe. The translocations of these metals to deeper profiles in two different soils involved either young and less humified organic matter, or older organic matter with a low degree of humification. Therefore, these two humic fractions were involved in the process of soil podzolization, with FA having a predominant role in the transport of Al, while HA was mainly responsible for the transport of Fe.