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DOI | 10.1093/bioinformatics/btw680 |
tcpl: the ToxCast pipeline for high- throughput screening data | |
Filer, Dayne L.; Kothiya, Parth; Setzer, R. Woodrow; Judson, Richard S.; Martin, Matthew T. | |
发表日期 | 2017-02-15 |
ISSN | 1367-4803 |
卷号 | 33期号:4页码:618-620 |
英文摘要 | Motivation: Large high-throughput screening (HTS) efforts are widely used in drug development and chemical toxicity screening. Wide use and integration of these data can benefit from an efficient, transparent and reproducible data pipeline. Summary: The tcpl R package and its associated MySQL database provide a generalized platform for efficiently storing, normalizing and doseresponse modeling of large high-throughput and high-content chemical screening data. The novel dose-response modeling algorithm has been tested against millions of diverse dose-response series, and robustly fits data with outliers and cytotoxicity-related signal loss. |
语种 | 英语 |
WOS记录号 | WOS:000397264100037 |
来源期刊 | BIOINFORMATICS
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来源机构 | 美国环保署 |
文献类型 | 期刊论文 |
条目标识符 | http://gcip.llas.ac.cn/handle/2XKMVOVA/62490 |
作者单位 | US EPA, Natl Ctr Computat Toxicol, Res Triangle Pk, NC 27711 USA |
推荐引用方式 GB/T 7714 | Filer, Dayne L.,Kothiya, Parth,Setzer, R. Woodrow,et al. tcpl: the ToxCast pipeline for high- throughput screening data[J]. 美国环保署,2017,33(4):618-620. |
APA | Filer, Dayne L.,Kothiya, Parth,Setzer, R. Woodrow,Judson, Richard S.,&Martin, Matthew T..(2017).tcpl: the ToxCast pipeline for high- throughput screening data.BIOINFORMATICS,33(4),618-620. |
MLA | Filer, Dayne L.,et al."tcpl: the ToxCast pipeline for high- throughput screening data".BIOINFORMATICS 33.4(2017):618-620. |
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