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DOI10.1016/j.yrtph.2017.02.015
Retrospective mining of toxicology data to discover multispecies and chemical class effects: Anemia as a case study
Judson, Richard S.; Martin, Matthew T.; Patlewicz, Grace; Wood, Charles E.
发表日期2017-06-01
ISSN0273-2300
卷号86页码:74-92
英文摘要

Predictive toxicity models rely on large amounts of accurate in vivo data. Here, we analyze the quality of in vivo data from the U.S. EPA Toxicity Reference Database (ToxRefDB), using chemical-induced anemia as an example. Considerations include variation in experimental conditions, changes in terminology over time, distinguishing negative from missing results, observer and diagnostic bias, and data transcription errors. Within ToxRefDB, we use hematological data on 658 chemicals tested in one or more of 1738 studies (subchronic rat or chronic rat, mouse, or dog). Anemia was reported most frequently in the rat subchronic studies, followed by chronic studies in dog, rat, and then mouse. Concordance between studies for a positive finding of anemia (same chemical, different laboratories) ranged from 90% (rat subchronic predicting rat chronic) to 40% (mouse chronic predicting rat chronic). Concordance increased with manual curation by 20% on average. We identified 49 chemicals that showed an anemia phenotype in at least two species. These included 14 aniline moiety-containing compounds that were further analyzed for their potential to be metabolically transformed into substituted anilines, which are known anemia-causing chemicals. This analysis should help inform future use of in vivo databases for model development. Published by Elsevier Inc.


英文关键词In vivo;Pathology;Database;Anemia;Uncertainty;Bioinformatics;Aniline
语种英语
WOS记录号WOS:000402445600009
来源期刊REGULATORY TOXICOLOGY AND PHARMACOLOGY
来源机构美国环保署
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/62314
作者单位US EPA, 109 TW Alexander Dr, Res Triangle Pk, NC 27711 USA
推荐引用方式
GB/T 7714
Judson, Richard S.,Martin, Matthew T.,Patlewicz, Grace,et al. Retrospective mining of toxicology data to discover multispecies and chemical class effects: Anemia as a case study[J]. 美国环保署,2017,86:74-92.
APA Judson, Richard S.,Martin, Matthew T.,Patlewicz, Grace,&Wood, Charles E..(2017).Retrospective mining of toxicology data to discover multispecies and chemical class effects: Anemia as a case study.REGULATORY TOXICOLOGY AND PHARMACOLOGY,86,74-92.
MLA Judson, Richard S.,et al."Retrospective mining of toxicology data to discover multispecies and chemical class effects: Anemia as a case study".REGULATORY TOXICOLOGY AND PHARMACOLOGY 86(2017):74-92.
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