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DOI10.1016/j.watres.2013.02.060
Characterization of fecal concentrations in human and other animal sources by physical, culture-based, and quantitative real-time PCR methods
Ervin, Jared S.1,2; Russell, Todd L.3; Layton, Blythe A.4; Yamahara, Kevan M.6; Wang, Dan3; Sassoubre, Lauren M.3; Cao, Yiping4; Kelty, Catherine A.5; Sivaganesan, Mano5; Boehm, Alexandria B.3; Holden, Patricia A.1,2; Weisberg, Stephen B.4; Shanks, Orin C.5
发表日期2013-11-15
ISSN0043-1354
卷号47期号:18页码:6873-6882
英文摘要

The characteristics of fecal sources, and the ways in which they are measured, can profoundly influence the interpretation of which sources are contaminating a body of water. Although feces from various hosts are known to differ in mass and composition, it is not well understood how those differences compare across fecal sources and how differences depend on characterization methods. This study investigated how nine different fecal characterization methods provide different measures of fecal concentration in water, and how results varied across twelve different fecal pollution sources. Sources investigated included chicken, cow, deer, dog, goose, gull, horse, human, pig, pigeon, septage and sewage. A composite fecal slurry was prepared for each source by mixing feces from 6 to 22 individual samples with artificial freshwater. Fecal concentrations were estimated by physical (wet fecal mass added and total DNA mass extracted), culture-based (Escherichia coli and enterococci by membrane filtration and defined substrate), and quantitative real-time PCR (Bacteroidales, E. coli, and enterococci) characterization methods. The characteristics of each composite fecal slurry and the relationships between physical, culture-based and qPCR-based characteristics varied within and among different fecal sources. An in silico exercise was performed to assess how different characterization methods can impact identification of the dominant fecal pollution source in a mixed source sample. A comparison of simulated 10:90 mixtures based on enterococci by defined substrate predicted a source reversal in 27% of all possible combinations, while mixtures based on E. coli membrane filtration resulted in a reversal 29% of the time. This potential for disagreement in minor or dominant source identification based on different methods of measurement represents an important challenge for water quality managers and researchers. Published by Elsevier Ltd.


英文关键词Water quality;Fecal indicator bacteria;Quantitative real-time PCR;Escherichia coli;Enterococci;Bacteroidales;Microbial source tracking
语种英语
WOS记录号WOS:000328444000007
来源期刊WATER RESEARCH
来源机构美国环保署
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/60512
作者单位1.Univ Calif Santa Barbara, Earth Res Inst, Santa Barbara, CA 93106 USA;
2.Univ Calif Santa Barbara, Bren Sch Environm Sci & Management, Santa Barbara, CA 93106 USA;
3.Stanford Univ, Dept Civil & Environm Engn, Stanford, CA 94305 USA;
4.Southern Calif Coastal Water Res Project, Costa Mesa, CA 92626 USA;
5.US EPA, Off Res & Dev, Natl Risk Management Res Lab, Cincinnati, OH 45268 USA;
6.Stanford Univ, Ctr Ocean Solut, Stanford, CA 94305 USA
推荐引用方式
GB/T 7714
Ervin, Jared S.,Russell, Todd L.,Layton, Blythe A.,et al. Characterization of fecal concentrations in human and other animal sources by physical, culture-based, and quantitative real-time PCR methods[J]. 美国环保署,2013,47(18):6873-6882.
APA Ervin, Jared S..,Russell, Todd L..,Layton, Blythe A..,Yamahara, Kevan M..,Wang, Dan.,...&Shanks, Orin C..(2013).Characterization of fecal concentrations in human and other animal sources by physical, culture-based, and quantitative real-time PCR methods.WATER RESEARCH,47(18),6873-6882.
MLA Ervin, Jared S.,et al."Characterization of fecal concentrations in human and other animal sources by physical, culture-based, and quantitative real-time PCR methods".WATER RESEARCH 47.18(2013):6873-6882.
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