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DOI10.1016/j.mimet.2013.10.016
Development and validation of an open source O-2-sensitive gel for physiological profiling of soil microbial communities
McLamore, E. S.1; Garland, J. L.2; Mackowiak, C.3; Desaunay, A.1; Garland, N.1; Chaturvedi, P.1; Taguchi, M.1; Dreaden, K.1; Catechis, John4; Ullman, J. L.1
发表日期2014
ISSN0167-7012
卷号96页码:62-67
英文摘要

Community level physiological profiling is a simple, high-throughput technique for assessing microbial community physiology. Initial methods relying on redox-dye based detection of respiration were subject to strong enrichment bias, but subsequent development of a microtiter assay using an oxygen-quenched dye reduced this bias and improved the versatility of the approach. Commercial production of the oxygen microplates recently stopped, which led to the present effort to develop and validate a system using a luminophore dye (platinum tetrakis pentafluorophenyl) immobilized at the bottom of wells within a 96 well microtiter plate. The technique was used to analyze three well-characterized Florida soils: oak saw palmetto scrub, coastal mixed hardwood, and soil from an agricultural field used to grow corn silage. Substrate induced respiration was monitored by measuring respiration rates in soils under basal conditions and comparing to soils supplemented with nitrogen and various carbon sources (mannose, casein, asparagine, coumaric acid). All data was compared to a previously available commercial assay. There were no significant differences in the maximum peak intensity or the time to peak response for all soils tested (p < 0.001, alpha = 0.05). The experimental assay plates can be reused on soils up to four times (based on a deviation of less than 5%), where the commercial assay should not be reused. The results indicate that the new oxygen-based bioassay is a cost effective, open source tool for functional profiling of microbial communities. (C) 2013 Elsevier B.V. All tights reserved.


英文关键词Physiological profiling;Oxygen quenched dye;Substrate induced respiration;Assay
语种英语
WOS记录号WOS:000329771000011
来源期刊JOURNAL OF MICROBIOLOGICAL METHODS
来源机构美国环保署
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/59411
作者单位1.Univ Florida, Gainesville, FL USA;
2.US EPA, Microbiol & Chem Exposure Assessment Res Div, Cincinnati, OH 45268 USA;
3.Univ Florida, Dept Soil & Water Sci, Gainesville, FL USA;
4.Kennedy Space Ctr, Space Life Sci Lab, Kennedy Space Ctr, FL USA
推荐引用方式
GB/T 7714
McLamore, E. S.,Garland, J. L.,Mackowiak, C.,et al. Development and validation of an open source O-2-sensitive gel for physiological profiling of soil microbial communities[J]. 美国环保署,2014,96:62-67.
APA McLamore, E. S..,Garland, J. L..,Mackowiak, C..,Desaunay, A..,Garland, N..,...&Ullman, J. L..(2014).Development and validation of an open source O-2-sensitive gel for physiological profiling of soil microbial communities.JOURNAL OF MICROBIOLOGICAL METHODS,96,62-67.
MLA McLamore, E. S.,et al."Development and validation of an open source O-2-sensitive gel for physiological profiling of soil microbial communities".JOURNAL OF MICROBIOLOGICAL METHODS 96(2014):62-67.
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