气候变化领域集成服务门户(CCPortal): Evolutionary stamps for adaptation traced in Cervus nippon genome using reduced representation sequencing

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DOI	10.1007/s12686-023-01339-x
	Evolutionary stamps for adaptation traced in Cervus nippon genome using reduced representation sequencing
	Sukhija, Nidhi; Goli, Rangasai Chandra; Sukhija, Mukul; Rathi, Pallavi; Jaglan, Komal; Dash, Aishwarya; Nandhini, P. B.; Kanaka, K. K.
发表日期	2024
ISSN	1877-7252
EISSN	1877-7260
起始页码	16
结束页码	1
卷号	16 期号:1
英文摘要	Sika deer is indigenous to East Asia. Currently the species is extinct or are nearing the verge of extinction, in numerous places. Reduced population size is sensitive to climate change and has poor adaptation as a result of inbreeding. In this study genome-wide Single nucleotide polymorphisms (SNPs) were identified using double-digest restriction site associated digestion (ddRAD) approach and annotated further to identify genes related to fitness. A total 85,001 SNPs were retained following the quality control. Composite Likelihood Ratio (CLR) statistics found 13 stronger selective sweeps, identified sweeps overlapped with genes related to adaptation, reproduction, cellular functions. Average heterozygosity and nucleotide diversity were 0.27 and 0.29 respectively. Admixture analysis furnished a single cluster indicating no further sub-divergence of Sika deer. These findings would help fabricate appropriate genetic improvement programs by inclusion in the SNP chips, in order to get deeper insights into deer genetics, evolution, domestication and conservation. Graphical AbstractBioinformatic analysis for unravelling genomic variants and selective sweep regions in Cervus nippon
英文关键词	Sika deer; ddRAD; SNP; Selective sweeps; diversity; Conservation
语种	英语
WOS研究方向	Biodiversity & Conservation ; Genetics & Heredity
WOS类目	Biodiversity Conservation ; Genetics & Heredity
WOS记录号	WOS:001151494400002
来源期刊	CONSERVATION GENETICS RESOURCES
文献类型	期刊论文
条目标识符	http://gcip.llas.ac.cn/handle/2XKMVOVA/293446
作者单位	Indian Council of Agricultural Research (ICAR); ICAR - National Dairy Research Institute; Govind Ballabh Pant University of Agriculture Technology; Lala Lajpat Rai University of Veterinary & Animal Sciences; Indian Council of Agricultural Research (ICAR); ICAR - Indian Institute of Agricultural Biotechnology
推荐引用方式 GB/T 7714	Sukhija, Nidhi,Goli, Rangasai Chandra,Sukhija, Mukul,et al. Evolutionary stamps for adaptation traced in Cervus nippon genome using reduced representation sequencing[J],2024,16(1).
APA	Sukhija, Nidhi.,Goli, Rangasai Chandra.,Sukhija, Mukul.,Rathi, Pallavi.,Jaglan, Komal.,...&Kanaka, K. K..(2024).Evolutionary stamps for adaptation traced in Cervus nippon genome using reduced representation sequencing.CONSERVATION GENETICS RESOURCES,16(1).
MLA	Sukhija, Nidhi,et al."Evolutionary stamps for adaptation traced in Cervus nippon genome using reduced representation sequencing".CONSERVATION GENETICS RESOURCES 16.1(2024).