气候变化领域集成服务门户(CCPortal): Chromosome-level genome assembly of Hippophae gyantsensis

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DOI	10.1038/s41597-024-02909-w
	Chromosome-level genome assembly of Hippophae gyantsensis
	Chen, Mingyue; Yang, Danni; Yang, Shihai; Yang, Xingyu; Chen, Zhiyu; Yang, Tianyu; Yang, Yunqiang; Yang, Yongping
发表日期	2024
EISSN	2052-4463
起始页码	11
结束页码	1
卷号	11 期号:1
英文摘要	Hippophae gyantsensis, which is a native tree species in China, is ideal for windbreak and sand fixing forests. It is an economically and ecologically valuable tree species distributed exclusively in the Qinghai-Tibet Plateau in China. In our study, we assembled a chromosome-level genome of H. gyantsensis using Illumina sequencing, Nanopore sequencing and chromosome structure capture technique. The genome was 716.32 Mb in size with scaffold N50 length of 64.84 Mb. A total of 716.25 Mb genome data was anchored and orientated onto 12 chromosomes with a mounting rate of up to 99.99%. Additionally, the genome was found to comprise approximately 56.84% repeat sequences, of which long terminal repeats(LTRs) that accounted for 33.19% of the entire genome. Meanwhile, a total of 32,316 protein-coding genes were predicted, and 91.07% of these genes were functionally annotated. We also completed a series of comparative genomic analyses to provide researchers with useful reference material for future studies on seabuckthorn.
语种	英语
WOS研究方向	Science & Technology - Other Topics
WOS类目	Multidisciplinary Sciences
WOS记录号	WOS:001151164200004
来源期刊	SCIENTIFIC DATA
文献类型	期刊论文
条目标识符	http://gcip.llas.ac.cn/handle/2XKMVOVA/292208
作者单位	Yunnan University; Chinese Academy of Sciences; Kunming Institute of Botany, CAS; Chinese Academy of Sciences; Kunming Institute of Botany, CAS; Chinese Academy of Sciences; University of Chinese Academy of Sciences, CAS
推荐引用方式 GB/T 7714	Chen, Mingyue,Yang, Danni,Yang, Shihai,et al. Chromosome-level genome assembly of Hippophae gyantsensis[J],2024,11(1).
APA	Chen, Mingyue.,Yang, Danni.,Yang, Shihai.,Yang, Xingyu.,Chen, Zhiyu.,...&Yang, Yongping.(2024).Chromosome-level genome assembly of Hippophae gyantsensis.SCIENTIFIC DATA,11(1).
MLA	Chen, Mingyue,et al."Chromosome-level genome assembly of Hippophae gyantsensis".SCIENTIFIC DATA 11.1(2024).