气候变化领域集成服务门户(CCPortal): The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation

CCPortal

DOI	10.1038/ng.3280
	The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation
	Wang, Yaping; Lu, Ying; Zhang, Yong; Ning, Zemin; Li, Yan; Zhao, Qiang; Lu, Hengyun; Huang, Rong; Xia, Xiaoqin; Feng, Qi; Liang, Xufang; Liu, Kunyan; Zhang, Lei; Lu, Tingting; Huang, Tao; Fan, Danlin; Weng, Qijun; Zhu, Chuanrang; Lu, Yiqi; Li, Wenjun; Wen, Ziruo; Zhou, Congcong; Tian, Qilin; Kang, Xiaojun; Shi, Mijuan; Zhang, Wanting; Jang, Songhun; Du, Fukuan; He, Shan; Liao, Lanjie; Li, Yongming; Gui, Bin; He, Huihui; Ning, Zhen; Yang, Cheng; He, Libo; Luo, Lifei; Yang, Rui; Luo, Qiong; Liu, Xiaochun; Li, Shuisheng; Huang, Wen; Xiao, Ling; Lin, Haoran; Han, Bin; Zhu, Zuoyan
发表日期	2015
ISSN	1061-4036
EISSN	1546-1718
卷号	47 期号:6
英文摘要	The grass carp is an important farmed fish, accounting for similar to 16% of global freshwater aquaculture, and has a vegetarian diet. Here we report a 0.9-Gb draft genome of a gynogenetic female adult and a 1.07-Gb genome of a wild male adult. Genome annotation identified 27,263 protein-coding gene models in the female genome. A total of 114 scaffolds consisting of 573 Mb are anchored on 24 linkage groups. Divergence between grass carp and zebrafish is estimated to have occurred 49-54 million years ago. We identify a chromosome fusion in grass carp relative to zebrafish and report frequent crossovers between the grass carp X and Y chromosomes. We find that transcriptional activation of the mevalonate pathway and steroid biosynthesis in liver is associated with the grass carp's adaptation from a carnivorous to an herbivorous diet. We believe that the grass carp genome could serve as an initial platform for breeding better-quality fish using a genomic approach.
学科领域	Genetics & Heredity
语种	英语
WOS研究方向	Genetics & Heredity
来源期刊	NATURE GENETICS
来源机构	中国科学院西北生态环境资源研究院
文献类型	期刊论文
条目标识符	http://gcip.llas.ac.cn/handle/2XKMVOVA/111811
作者单位	Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan, Peoples R China
推荐引用方式 GB/T 7714	Wang, Yaping,Lu, Ying,Zhang, Yong,et al. The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation[J]. 中国科学院西北生态环境资源研究院,2015,47(6).
APA	Wang, Yaping.,Lu, Ying.,Zhang, Yong.,Ning, Zemin.,Li, Yan.,...&Zhu, Zuoyan.(2015).The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation.NATURE GENETICS,47(6).
MLA	Wang, Yaping,et al."The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation".NATURE GENETICS 47.6(2015).